Tracking the COVID Virus via Genomic Dashboards

As part of our response to the COVID pandemic, WSLH scientists have been performing genomic sequencing to track how the SARS-CoV-2 virus (the virus that causes COVID) changes over time.

As the virus replicates and makes copies of itself, changes in the genome called mutations are introduced. When a virus emerges with one or more new changes it is referred to as a variant of the original virus.

The WSLH launched two genomic dashboards to visually display these virus variants. Data in these dashboards includes genomic sequencing performed at the WSLH, as well as other laboratories and public health partners. Data is made publicly available after review and is compliant with Data-Sharing and Usage agreements.

The dashboards are part of the WSLH Data Portal, which allows people to explore accessible up to date information made available from public datasets. Data is transformed, linked, and visualized to increase clarity, reveal trends, simplify access, and promote overall information transparency. The plan is for additional dashboards to be added to the data portal in the future.

Dr. Kelsey Florek with the WSLH Communicable Disease Division developed the data portal and the SARS-CoV-2 Genomic Dashboard and collaborated with Dr. Adelaide Roguet with the WSLH Wastewater-Based Epidemiology Team, who created the SARS-CoV-2 Wastewater Genomic Dashboard.

Mei Baker Named Everyday Life Saver in Newborn Screening

WSLH Newborn Screening Director and UW Professor of Pediatrics Dr. Mei Baker received the Everyday Life Saver Award in Newborn Screening at the Association of Public Health Laboratories (APHL) 2022 Newborn Screening Symposium.

APHL’s Everyday Life Saver Award in Newborn Screening highlights the meaningful, ongoing ways the recipient contributes to the morale of their team and/or operations of their program on a daily basis.

Baker also won APHL’s Harry Hannon Laboratory Improvement Award in Newborn Screening in 2014, but said this latest award means so much more.

“This second APHL award holds a very special place in my heart because the nominators are from home,” she said.

From one of her nomination letters –

“Dr. Baker has made great contributions to expanding and improving the screening of newborns by public health agencies in Wisconsin and nationally through her research in public health genetics and genomics, which focuses on applying and translating advanced biochemical and molecular technologies into routine newborn screening practice.

“Dr. Baker has developed methods and improvements to screen for severe combined immunodeficiency (SCID), Fragile X, Spinal Muscular Atrophy, and Pompe disease. These improvements have had a direct effect in improving the quality of life of newborns and their families through assuring laboratory accreditation requirements, enhancing the specificity of testing and establishing new creative laboratory approaches and technologies. In addition, Dr. Baker serves as mentor to several junior faculty, as well as to her public health scientific staff within the WSLH; giving them opportunities to grow and develop. She is an inspiration to all that have an interest in public health Newborn Screening and have an opportunity to work with her.”

 

UW Soil and Forage Analysis Lab moves to WSLH

By Jori Skalitzky, UW–Madison CALS Office of External Relations

Multiple small square boxes holding dried and ground soil samples.

Organized soil samples are seen after being dried and ground, before undergoing nutrient or organic matter testing. Photo by Michael P. King/UW–Madison CALS

The University of Wisconsin–Madison Soil and Forage Analysis Lab, a trusted resource for soil testing services utilized by farmers, gardeners, researchers and others, has moved to a new home — physically and administratively. Formerly housed at the university’s Marshfield Agricultural Research Station in the College of Agricultural and Life Sciences, the lab is now part of the Wisconsin State Laboratory of Hygiene (WSLH) and located in a WSLH facility in Madison, Wisconsin.

“The Soil and Forage Analysis Lab is a great addition to the State Lab of Hygiene, as we already offer a wide variety of tests related to public and environmental health, primarily focusing on water and air,” says Jamie Schauer, WSLH director and professor in the Department of Civil and Environmental Engineering at UW–Madison. “This addition will serve as an engine to drive research and promote activity in the space of soil, with the big-picture goal of studying and supporting a healthy environment.”

The WSLH, established in 1903, is part of UW­–Madison and serves as the state’s official public, environmental and occupational health laboratory. It provides analytical services, research and development, public health programs, laboratory proficiency testing, and training and education of students and professionals.

The Soil and Forage Analysis Lab offers a suite of soil testing packages, including for farm, lawn and garden, turfgrass and forest soils. It also offers a wide variety of individual tests, quantifying single compounds or nutrients found in soil, forage, manure and plants.

Learn more at – https://news.cals.wisc.edu/2022/12/05/uw-soil-and-forage-analysis-lab-moves-to-wisconsin-state-lab-of-hygiene/

2022 Holiday Schedule

Please note the following changes to the Wisconsin State Laboratory of Hygiene’s operations due to the observance of the Christmas and New Year’s holidays.

The table below lists the hours of operations for our Clinical Specimen Receiving department.

As always, if you have an off-hours emergency, please call the WSLH Emergency Pager at 608-263-3280.

NOTE: The WSLH Environmental Health Division also will be closed on December 26th and January 2nd. For environmental health samples – including water testing samples – it is best to submit your samples as early in the weeks of December 19th and 26th as possible due to the holidays.

 

DATE

2601 Agriculture Drive

Clinical Specimen Receiving

Direct Phone: 608-224-4229

465 Henry Mall

Clinical Specimen Receiving

Direct Phone for Saturdays/Holidays: 608-262-5817

Saturday, December 24, 2022 – Christmas Eve 6:30 AM – 12:30 PM 7:00 AM – 12:00 Noon
Sunday, December 25, 2022 – Christmas Day CLOSED CLOSED
Monday, December 26, 2022 – Observed Christmas Day CLOSED 7:00 AM – Noon
Newborn Screening Specimens Only
Saturday, December 31, 2022 – New Year’s Eve 6:30 AM – 12:30 PM 7:00 AM – 12:00 Noon
Sunday, January 1, 2023 – New Year’s Day CLOSED CLOSED
Monday, January 2, 2022 – Observed New Year’s Day CLOSED 7:00 AM – Noon
Newborn Screening Specimens Only

Thanksgiving 2022 Holiday Hours

The Wisconsin State Laboratory of Hygiene will be closed on Thursday, November 24, 2022 for the Thanksgiving holiday.

Our Specimen Receiving departments will observe the following hours of operation for the Thanksgiving holiday:

 

2601 Agriculture Drive – Specimen Receiving
DATE HOURS
Thursday, 11/24, Thanksgiving Day CLOSED
Friday, 11/25 6 AM – 4:30 PM
Saturday, 11/26 6:30 AM – 12:30 PM

 

465 Henry Mall – Specimen Receiving
DATE HOURS
Thursday, 11/24, Thanksgiving Day CLOSED
Friday, 11/25 7 AM – 4:30 PM
Saturday, 11/26 7 AM – 12 PM (Noon)

 

Labor Day 2022 Holiday Hours

Please note the following changes to the Wisconsin State Laboratory of Hygiene’s operations for the Labor Day holiday.

As always, if you have an off-hours emergency, please call the WSLH Emergency Pager at 608-263-3280.

 

DATE

2601 Agriculture Drive

Clinical Specimen Receiving

Direct phone Saturdays: 608-224-4229

465 Henry Mall

Clinical Specimen Receiving

Direct phone Saturdays: 608-262-5817

Saturday, September 3, 2022 6:30 AM – 12:30 PM 7:00 AM – 12:00 Noon
Sunday, September 4, 2022 CLOSED CLOSED
Monday, September 5, 2022 CLOSED 7:00 AM-12:00 Noon
Newborn Screening Specimens Only

New Mycoplasma genitalium Test

On Thursday, September 1, 2022 the Wisconsin State Laboratory of Hygiene (WSLH) will begin testing for Mycoplasma genitalium using the Aptima Transcription-Mediated Amplification (TMA) assay. This assay uses nucleic acid probes and TMA for the qualitative detection of ribosomal RNA (rRNA) to aid in the diagnosis of M. genitalium infection. The M. genitalium assay uses the same Aptima collection kits currently used for CT/GC testing and a single specimen can be used for multiple tests. M. genitalium testing is available for patients 14 years and older.

Read the full test announcement

4th of July 2022 Holiday Hours

Please note the following changes to the Wisconsin State Laboratory of Hygiene’s operations for the July 4th holiday.

As always, if you have an off-hours emergency, please call the WSLH Emergency Pager at 608-263-3280.

 

DATE

2601 Agriculture Drive

Clinical Specimen Receiving

Direct phone: 608-224-4229

465 Henry Mall

Clinical Specimen Receiving

Direct phone: 608-265-9188

Saturday, July 2, 2022 6:30 AM – 12:30 PM 7:00 AM – 12:00 Noon
Sunday, July 3, 2022 CLOSED CLOSED
Monday, July 4, 2022 CLOSED 7:00 AM-12:00 Noon
Newborn Screening Specimens Only

Memorial Day 2022 Holiday Hours

Please note the following changes to the Wisconsin State Laboratory of Hygiene’s operations due to the observance of the Memorial Day holiday.

The table below lists the hours of operations for our Clinical Specimen Receiving departments.

As always, if you have an off-hours emergency, please call the WSLH Emergency Pager at 608-263-3280.

 

DATE

2601 Agriculture Drive

Clinical Specimen Receiving

(Direct phone: 608-224-4229)

465 Henry Mall

Clinical Specimen Receiving

(Direct phone Saturdays/Holidays: 608-262-5817)

Saturday, May 28, 2022 6:30 AM – 12:30 PM 7:00 AM – Noon
Sunday, May 29, 2022 CLOSED CLOSED
Monday, May 30, 2022 CLOSED 7:00 AM-12:00 Noon
Newborn Screening Specimens Only