Oncology Test Menu

Chromosome Analysis
  • 811 Chromosome Analysis, Unstimulated Blood, for Hematologic Disorders
  • 812 Chromosome Analysis, Bone Marrow, for Hematologic Disorders
  • 836 Chromosome Analysis, Tumor/Pleural Effusion/ Ascites fluid, for Neoplastic Disorders
Molecular Analysis
  • 887M31 RT-PCR for BCR/ABL1 Fusion Transcript, t(9;22)(q34;q11.2)
  • 887M35 RT-PCR for PML/RARA Fusion Transcript, t(15;17)(q24;q21)
  • 893M51 Quantitative PCR for BCR/ABL1, t(9;22)(q34;q11.2) Major breakpoint
  • 893M52 Quantitative PCR for BCR/ABL1, t(9;22)(q34;q11.2) minor breakpoint
  • 890ONC Illumina Microarray Analysis- Oncology
FISH Analysis Paraffin Sections (FFPE)*
  • 883 ERBB2 (HER2) Gene Amplification Status
  • 883F2 MDM2 Gene Amplification Status
  • 886F5 Deletion 1p36 for glial neoplasia
  • 886F6 Deletion 19q13 for glial neoplasia
  • 886F7 Deletion 17p13.1, TP53/17CEN for Lymphoma
  • 886F8 BRAF Gene Rearrangement, 7q34

Top of Page

FISH Analysis (Panels)
  • MYELOMA PANEL includes
    • 882F82 IGH Gene Rearrangement, 14q32
    • 881F62 CCND1/IGH Fusion, t(11;14)(q13;q32)
    • 881F69 FGFR3/IGH Fusion, t(4;14)(p16;q32)
    • 881F70 IGH/MAF Fusion, t(14;16)(q32;q23)
    • 881F72 IGH/MAFB t(14;20)(q32;q12)
    • 870F40 11q22 Deletion/Duplication, ATM gene
    • 870F43 Deletion 13q14, D13S319
    • 870F47 Deletion 17p13.1, TP53
    • 870F55 Gain 1q21 for myeloma
  • AML PANEL includes
    • 870F45 Deletion 5q31, EGR1
    • 870F42 Deletion 7q31, D7S522
    • 881F63 RUNX1T1/RUNX1 Fusion, t(8;21)(q22;q22)
    • 882F80 CBFB Gene Rearrangement, 16q22
    • 882F84 KMT2A (MLL) Gene Rearrangement, 11q23

Top of Page

FISH Analysis

see also FISH probes by chromosome and FISH probes by use category including CPT codes

  • 870F40 11q22 Deletion/Duplication, ATM gene
  • 870F41 Trisomy 8, D8Z2
  • 870F42 Deletion 7q31, D7S522
  • 870F43 Deletion 13q14, D13S319
  • 870F44 Deletion 20q, D20S108
  • 870F45 Deletion 5q31, EGR1
  • 870F46 Deletion 9p21, P16
  • 870F47 Deletion 17p13.1, TP53
  • 870F48 Trisomy 4, CEP4
  • 870F49 Trisomy 10, CEP10
  • 870F50 Trisomy 17, D17Z1
  • 870F51 Trisomy 12, D12Z3
  • 870F52 X and Y sex chromosomes
  • 870F55 Gain 1q21 for myeloma
  • 881F60 AP12/MALT1 Fusion, t(11;18)(q21;q21)
  • 881F61 BCR/ABL1 Fusion, t(9;22)(q34;q11.2)
  • 881F62 CCND1/IGH Fusion, t(11;14)(q13;q32) *
  • 881F63 RUNX1T1/RUNX1 Fusion, t(8;21)(q22;q22)
  • 881F64 IGH/BCL2 Fusion, t(14;18)(q32;q21) *
  • 881F65 MYC/IGH Fusion, t(8;14)(q24;q32) *
  • 881F66 PML/RARA Fusion, t(15;17)(q24;q21)
  • 881F67 ETV6/RUNX1 Fusion, t(12;21)(p13;q22)
  • 881F68 IGH/MALT1 Fusion, t(14;18)(q32;q21)
  • 881F69 FGFR3/IGH Fusion, t(4;14)(p16;q32)
  • 881F70 IGH/MAF Fusion, t(14;16)(q32;q23)
  • 881F71 BCR/ABL1+ASS Tri-color Fusion, t(9;22)
  • 881F72 IGH/MAFB t(14;20)(q32;q12)
  • 882F78 NUP98 Gene Rearrangement, 11p15.4
  • 882F79 MECOM Gene Rearrangement, 3q26.2
  • 882F80 CBFB Gene Rearrangement, 16q22
  • 882F81 EWSR1 Gene Rearrangement, 22q12.2 *
  • 882F82 IGH Gene Rearrangement, 14q32 *
  • 882F83 MALT1 Gene Rearrangement, 18q21 *
  • 882F84 KMT2A (MLL) Gene Rearrangement, 11q23
  • 882F85 MYC Gene Rearrangement, 8q24 *
  • 882F86 SS18 Gene Rearrangement, 18q11.2 *
  • 882F87 ALK Gene Rearrangement, 2p23 *
  • 882F88 BCL6 Gene Rearrangement, 3q27 *
  • 882F89 FIP1L1-CHIC2-PDGFRa Gene Rearrangement 4q12
  • 882F90 PDGFRb Gene Rearrangement, 5q33
  • 882F91 TRA/D Gene Rearrangement, 14q11.2
  • 882F92 RARA Gene Rearrangement, 17q21
  • 882F93 FGFR1 Gene Rearrangement, 8p11
  • 882F94 DDIT3 (CHOP) Gene Rearrangement, 12q13 *
  • 882F95 FUS Gene Rearrangement, 16p11 *
  • 882F97 CRLF2 Gene Rearrangement, Xp22.33/Yp11.23
  • 882F98 ABL1 Gene Rearrangement, 9q34
  • 882F99 ABL2 Gene Rearrangement, 1q25.2

 red asterisk * denotes probes also validated for use on FFPE

Top of Page

Return to Cytogenetics Home

UW Cytogenetic Services and Molecular Genetics     465 Henry Mall, Room 419   Madison, WI 53706        

cytogenetics@mail.slh.wisc.edu       Phone:  608-262-0402  / 800-862-1013             Fax:  608-265-7818